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Algebraic analysis of the computation in the Belousov-Zhabotinsky reaction
(Springer Nature, 2012)
We analyse two very simple Petri nets inspired by the Oregonator model of the Belousov-Zhabotinsky reaction using our stochastic Petri net simulator. We then perform the Krohn-Rhodes holonomy decomposition of the automata ...
Automatic Analysis of Computation in BioChemical Reactions
(2008)
We propose a modeling and analysis method for biochemical reactions based on finite state automata. This is a completely different approach compared to traditional modeling of reactions by differential equations. Our method ...