Browsing by Author "Rezwan, F."

Now showing items 1-5 of 5

    • ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression 

      Parkinson, H.; Kapushesky, M.; Kolesnikov, N.; Rustici, G.; Shojatalab, M.; Abeygunawardena, N.; Berube, H.; Dylag, M.; Emam, I.; Farne, A.; Holloway, E.; Lukk, M.; Malone, J.; Mani, R.; Pilicheva, E.; Rayner, T.F.; Rezwan, F.; Sharma, A.; Williams, E.; Bradley, X.Z.; Adamusiak, T.; Brandizi, M.; Burdett, T.; Coulson, R.; Krestyaninova, M.; Kurnosov, P.; Maguire, E.; Neogi, S.G.; Rocca-Serra, P.; Sansone, S.A.; Sklyar, N.; Zhao, M.; Sarkans, U.; Brazma, A. (2009)
      ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of ...

    • Combining experts in order to identify binding sites in genomic data 

      Rezwan, F.; Sun, Yi.; Robinson, M.; Adams, R.G.; Rust, A.G.; Davey, N. (2008)
      The identification of cis-regulatory binding sites in DNA is a difficult problem in computational biology. To obtain a full understanding of the complex machinery embodied in genetic regulatory networks it is necessary to ...

    • Combining experts in order to identify binding sites in yeast and mouse genomic data 

      Robinson, M.; Gonzalez Castellano, C.; Rezwan, F.; Adams, R.G.; Davey, N.; Rust, A.G.; Sun, Yi. (2008)
      The identification of cis-regulatory binding sites in DNA is a difficult problem in computational biology. To obtain a full understanding of the complex machinery embodied in genetic regulatory networks it is necessary to ...

    • MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB 

      Rayner, T.F.; Rezwan, F.; Lukk, M.; Bradley, X.Z.; Farne, A.; Holloway, E.; Malone, J.; Williams, E.; Parkinson, H. (2009)
      The MAGE-TAB format for microarray data representation and exchange has been proposed by the microarray community to replace the more complex MAGE-ML format. We present a suite of tools to support MAGE-TAB generation and ...

    • Using randomised vectors in transcription factor binding site predictions 

      Rezwan, F.; Sun, Yi.; Davey, N.; Adams, R.G.; Rust, A.G.; Robinson, M. (Institute of Electrical and Electronics Engineers (IEEE), 2010)
      Finding the location of binding sites in DNA is a difficult problem. Although the location of some binding sites have been experimentally identified, other parts of the genome may or may not contain binding sites. This ...