dc.contributor.author | Hucka, M. | |
dc.contributor.author | Finney, A. | |
dc.contributor.author | Sauro, H. | |
dc.contributor.author | Bolouri, H. | |
dc.contributor.author | Doyle, J. | |
dc.contributor.author | Kitano, H. | |
dc.date.accessioned | 2013-10-31T11:00:57Z | |
dc.date.available | 2013-10-31T11:00:57Z | |
dc.date.issued | 2002 | |
dc.identifier.citation | Hucka , M , Finney , A , Sauro , H , Bolouri , H , Doyle , J & Kitano , H 2002 , The ERATO Systems Biology Workbench : enabling interaction and exchange between software tools for computational biology . in Procs Pacific Symposium on Biocomputing . vol. 7 , pp. 450-461 . < http://psb.stanford.edu/psb-online/proceedings/psb02/hucka.pdf > | |
dc.identifier.uri | http://hdl.handle.net/2299/11944 | |
dc.description.abstract | Researchers in computational biology today make use of a large number of different software packages for modeling, analysis, and data manipulation and visualization. In this paper, we describe the ERATO Systems Biology Workbench (SBW), a software framework that allows these heterogeneous application components|written in diverse programming languages and running on different platforms|to communicate and use each others' data and algorithmic capabilities. Our goal is to create a simple, open-source software infrastructure which is effective, easy to implement and easy to understand. SBW uses a broker-based architecture and enables applications (potentially running on separate, distributed computers) to communicate via a simple network protocol. The interfaces to the system are encapsulated in client-side libraries that we provide for different programming languages. We describe the SBW architecture and the current set of modules, as well as alternative implementation technologies | en |
dc.format.extent | 657582 | |
dc.language.iso | eng | |
dc.relation.ispartof | Procs Pacific Symposium on Biocomputing | |
dc.title | The ERATO Systems Biology Workbench : enabling interaction and exchange between software tools for computational biology | en |
dc.contributor.institution | School of Computer Science | |
dc.identifier.url | http://psb.stanford.edu/psb-online/proceedings/psb02/hucka.pdf | |
rioxxterms.type | Other | |
herts.preservation.rarelyaccessed | true | |