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dc.contributor.authorWilling, Eva Maria
dc.contributor.authorRawat, Vimal
dc.contributor.authorMandáková, Terezie
dc.contributor.authorMaumus, Florian
dc.contributor.authorJames, Geo Velikkakam
dc.contributor.authorNordström, Karl J.V.
dc.contributor.authorBecker, Claude
dc.contributor.authorWarthmann, Norman
dc.contributor.authorChica, Claudia
dc.contributor.authorSzarzynska, Bogna
dc.contributor.authorZytnicki, Matthias
dc.contributor.authorAlbani, Maria C.
dc.contributor.authorKiefer, Christiane
dc.contributor.authorBergonzi, Sara
dc.contributor.authorCastaings, Loren
dc.contributor.authorMateos, Julieta L.
dc.contributor.authorBerns, Markus C.
dc.contributor.authorBujdoso, Nora
dc.contributor.authorPiofczyk, Thomas
dc.contributor.authorDe Lorenzo, Laura
dc.contributor.authorBarrero-Sicilia, Cristina
dc.contributor.authorMateos, Isabel
dc.contributor.authorPiednoël, Mathieu
dc.contributor.authorHagmann, Jörg
dc.contributor.authorChen-Min-Tao, Romy
dc.contributor.authorIglesias-Fernández, Raquel
dc.contributor.authorSchuster, Stephan C.
dc.contributor.authorAlonso-Blanco, Carlos
dc.contributor.authorRoudier, François
dc.contributor.authorCarbonero, Pilar
dc.contributor.authorPaz-Ares, Javier
dc.contributor.authorDavis, Seth J.
dc.contributor.authorPecinka, Ales
dc.contributor.authorQuesneville, Hadi
dc.contributor.authorColot, Vincent
dc.contributor.authorLysak, Martin A.
dc.contributor.authorWeigel, Detlef
dc.contributor.authorCoupland, George
dc.contributor.authorSchneeberger, Korbinian
dc.date.accessioned2018-01-30T22:24:25Z
dc.date.available2018-01-30T22:24:25Z
dc.date.issued2015-02-02
dc.identifier.citationWilling , E M , Rawat , V , Mandáková , T , Maumus , F , James , G V , Nordström , K J V , Becker , C , Warthmann , N , Chica , C , Szarzynska , B , Zytnicki , M , Albani , M C , Kiefer , C , Bergonzi , S , Castaings , L , Mateos , J L , Berns , M C , Bujdoso , N , Piofczyk , T , De Lorenzo , L , Barrero-Sicilia , C , Mateos , I , Piednoël , M , Hagmann , J , Chen-Min-Tao , R , Iglesias-Fernández , R , Schuster , S C , Alonso-Blanco , C , Roudier , F , Carbonero , P , Paz-Ares , J , Davis , S J , Pecinka , A , Quesneville , H , Colot , V , Lysak , M A , Weigel , D , Coupland , G & Schneeberger , K 2015 , ' Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation ' , Nature Plants , vol. 1 , 14023 . https://doi.org/10.1038/nplants.2014.23
dc.identifier.otherPURE: 11884460
dc.identifier.otherPURE UUID: c0899077-27ae-4553-8d78-3f68b53e8643
dc.identifier.otherScopus: 84986194435
dc.identifier.otherORCID: /0000-0001-7544-5619/work/33811132
dc.identifier.urihttp://hdl.handle.net/2299/19655
dc.descriptionThis document is the Accepted Manuscript version, made available in accordance to Springer Nature Terms of reuse of archived manuscripts.
dc.description.abstractDespite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 .Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.en
dc.language.isoeng
dc.relation.ispartofNature Plants
dc.subjectPlant Science
dc.titleGenome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylationen
dc.contributor.institutionSchool of Life and Medical Sciences
dc.contributor.institutionGeography, Environment and Agriculture
dc.contributor.institutionAgriculture, Veterinary and Food Sciences
dc.contributor.institutionCrop and Environmental Protection
dc.description.statusPeer reviewed
dc.identifier.urlhttp://www.scopus.com/inward/record.url?scp=84986194435&partnerID=8YFLogxK
rioxxterms.versionAM
rioxxterms.versionofrecordhttps://doi.org/10.1038/nplants.2014.23
rioxxterms.typeJournal Article/Review
herts.preservation.rarelyaccessedtrue


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