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dc.contributor.authorShapiro, B.E.
dc.contributor.authorFinney, A.
dc.contributor.authorHucka, M.
dc.contributor.authorBornstein, B.
dc.contributor.authorFunahashi, A.
dc.contributor.authorJouraku, A.
dc.contributor.authorKeating, S.
dc.contributor.authorLe Novere, N.
dc.contributor.authorMatthews, J.
dc.contributor.authorSchilstra, M.
dc.contributor.editorChoi, S.
dc.date.accessioned2008-09-15T13:26:12Z
dc.date.available2008-09-15T13:26:12Z
dc.date.issued2007
dc.identifier.citationShapiro , B E , Finney , A , Hucka , M , Bornstein , B , Funahashi , A , Jouraku , A , Keating , S , Le Novere , N , Matthews , J & Schilstra , M 2007 , SBML models and MathSBML . in S Choi (ed.) , Introduction to Systems Biology . Springer Nature , pp. 395-421 .
dc.identifier.isbn978 1 58829 706 8
dc.identifier.otherPURE: 96137
dc.identifier.otherPURE UUID: 24b05097-802f-4b9a-a3dc-52fdc4e27dc4
dc.identifier.otherdspace: 2299/2370
dc.identifier.otherScopus: 84900067596
dc.identifier.urihttp://hdl.handle.net/2299/2370
dc.description.abstractMathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation.en
dc.language.isoeng
dc.publisherSpringer Nature
dc.relation.ispartofIntroduction to Systems Biology
dc.subjectBiomodels
dc.titleSBML models and MathSBMLen
dc.contributor.institutionSchool of Computer Science
dc.contributor.institutionScience & Technology Research Institute
dc.contributor.institutionScience, Technology and Creative Arts Central
rioxxterms.typeOther
herts.preservation.rarelyaccessedtrue


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