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dc.contributor.authorShapiro, B.E.
dc.contributor.authorFinney, A.
dc.contributor.authorHucka, M.
dc.contributor.authorBornstein, B.
dc.contributor.authorFunahashi, A.
dc.contributor.authorJouraku, A.
dc.contributor.authorKeating, S.
dc.contributor.authorLe Novere, N.
dc.contributor.authorMatthews, J.
dc.contributor.authorSchilstra, M.
dc.contributor.editorChoi, S.
dc.date.accessioned2008-09-15T13:26:12Z
dc.date.available2008-09-15T13:26:12Z
dc.date.issued2007
dc.identifier.citationShapiro , B E , Finney , A , Hucka , M , Bornstein , B , Funahashi , A , Jouraku , A , Keating , S , Le Novere , N , Matthews , J & Schilstra , M 2007 , SBML models and MathSBML . in S Choi (ed.) , Introduction to Systems Biology . Human Press / Springer , pp. 395-421 .
dc.identifier.isbn978 1 58829 706 8
dc.identifier.otherPURE: 96137
dc.identifier.otherPURE UUID: 24b05097-802f-4b9a-a3dc-52fdc4e27dc4
dc.identifier.otherdspace: 2299/2370
dc.identifier.otherScopus: 84900067596
dc.identifier.urihttp://hdl.handle.net/2299/2370
dc.description.abstractMathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation.en
dc.language.isoeng
dc.publisherHuman Press / Springer
dc.relation.ispartofIntroduction to Systems Biology
dc.subjectBiomodels
dc.titleSBML models and MathSBMLen
dc.contributor.institutionSchool of Computer Science
dc.contributor.institutionScience & Technology Research Institute
dc.contributor.institutionScience, Technology and Creative Arts Central
rioxxterms.typeOther
herts.preservation.rarelyaccessedtrue


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