dc.contributor.author | Shapiro, B.E. | |
dc.contributor.author | Finney, A. | |
dc.contributor.author | Hucka, M. | |
dc.contributor.author | Bornstein, B. | |
dc.contributor.author | Funahashi, A. | |
dc.contributor.author | Jouraku, A. | |
dc.contributor.author | Keating, S. | |
dc.contributor.author | Le Novere, N. | |
dc.contributor.author | Matthews, J. | |
dc.contributor.author | Schilstra, M. | |
dc.contributor.editor | Choi, S. | |
dc.date.accessioned | 2008-09-15T13:26:12Z | |
dc.date.available | 2008-09-15T13:26:12Z | |
dc.date.issued | 2007 | |
dc.identifier.citation | Shapiro , B E , Finney , A , Hucka , M , Bornstein , B , Funahashi , A , Jouraku , A , Keating , S , Le Novere , N , Matthews , J & Schilstra , M 2007 , SBML models and MathSBML . in S Choi (ed.) , Introduction to Systems Biology . Springer Nature , pp. 395-421 . | |
dc.identifier.isbn | 978 1 58829 706 8 | |
dc.identifier.other | PURE: 96137 | |
dc.identifier.other | PURE UUID: 24b05097-802f-4b9a-a3dc-52fdc4e27dc4 | |
dc.identifier.other | dspace: 2299/2370 | |
dc.identifier.other | Scopus: 84900067596 | |
dc.identifier.uri | http://hdl.handle.net/2299/2370 | |
dc.description.abstract | MathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation. | en |
dc.language.iso | eng | |
dc.publisher | Springer Nature | |
dc.relation.ispartof | Introduction to Systems Biology | |
dc.subject | Biomodels | |
dc.title | SBML models and MathSBML | en |
dc.contributor.institution | School of Computer Science | |
dc.contributor.institution | Science & Technology Research Institute | |
dc.contributor.institution | Science, Technology and Creative Arts Central | |
rioxxterms.type | Other | |
herts.preservation.rarelyaccessed | true | |