Browsing by Author "Finney, A."

Now showing items 1-4 of 4

    • CellML2SBML : conversion of CellML into SBML 

      Schilstra, M.; Li, L.; Matthews, J.; Finney, A.; Hucka, M.; Le Novere, N. (2006)
      CellML and SBML are XML-based languages for storage and exchange of molecular biological and physiological reaction models. They use very similar subsets of MathML to specify the mathematical aspects of the models. CellML2SBML ...

    • The ERATO Systems Biology Workbench : enabling interaction and exchange between software tools for computational biology 

      Hucka, M.; Finney, A.; Sauro, H.; Bolouri, H.; Doyle, J.; Kitano, H. (2002)
      Researchers in computational biology today make use of a large number of different software packages for modeling, analysis, and data manipulation and visualization. In this paper, we describe the ERATO Systems Biology ...

    • Evolving a Lingua Franca and Associated Software Infrastructure for Computational Systems Biology - the Systems Biology Markup Language (SBML) Project 

      Hucka, M.; Finney, A.; Bornstein, B.; Keating, S.; Shapiro, B.E.; Matthews, J.; Kovitz, B.L.; Schilstra, M.; Funahashi, A.; Doyle, J.C.; Kitano, H. (2004)
      Biologists are increasingly recognising that computational modelling is crucial for making sense of the vast quantities of complex experimental data that are now being collected. The systems biology field needs agreed-upon ...

    • SBML models and MathSBML 

      Shapiro, B.E.; Finney, A.; Hucka, M.; Bornstein, B.; Funahashi, A.; Jouraku, A.; Keating, S.; Le Novere, N.; Matthews, J.; Schilstra, M. (Springer Nature, 2007)
      MathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of ...