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        CellML2SBML : conversion of CellML into SBML

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        102145.pdf (PDF, 128Kb)
        Author
        Schilstra, M.
        Li, L.
        Matthews, J.
        Finney, A.
        Hucka, M.
        Le Novere, N.
        Attention
        2299/2362
        Abstract
        CellML and SBML are XML-based languages for storage and exchange of molecular biological and physiological reaction models. They use very similar subsets of MathML to specify the mathematical aspects of the models. CellML2SBML is implemented as a suite of XSLT stylesheets that, when applied consecutively, convert models expressed in CellML into SBML without significant loss of information. The converter is based on the most recent stable versions of the languages (CellML version 1.1; SBML Level 2 Version 1), and the XSLT used in the stylesheets adheres to the XSLT version 1.0 specification. Of all 306 models in the CellML repository in April 2005, CellML2SBML converted 91% automatically into SBML. Minor manual changes to the unit definitions in the originals raised the percentage of successful conversions to 96%
        Publication date
        2006
        Published in
        Bioinformatics
        Published version
        https://doi.org/10.1093/bioinformatics/btl047
        Other links
        http://hdl.handle.net/2299/2362
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